Publications

The fission yeast CENP-B protein Abp1 prevents pervasive transcription of repetitive DNA elements. Daulny A, Mejia-Ramirez E, Aguilar-Arnal L, Reina O, Auer H, Zaratiegui M, Azorin F, Rosado-Lugo JD (2016) Biochim Biophys Acta 1859:1314-21.
 
Diversity of Interstitial Lung Fibroblasts Is Regulated by Platelet-Derived Growth Factor Receptor α Kinase Activity. Green J, Endale M, Auer H, Perl AK. (2016) Am J Respir Cell Mol Biol. 54:532-45.
 
The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies. Earl J, Rico D, Carrillo-de-Santa-Pau E, Rodríguez-Santiago B, Méndez-Pertuz M, Auer H, Gómez G, Grossman HB, Pisano DG, Schulz WA, Pérez-Jurado LA, Carrato A, Theodorescu D, Chanock S, Valencia A, Real FX. (2015) BMC Genomics. 16:403.
 
Differential Gene Expression in Gonadotropin-Releasing Hormone Neurons of Male and Metestrous Female Mice. Vastagh C, Rodolosse A, Solymosi N, Farkas I, Auer H, Sárvári M, Liposits Z. (2015) Neuroendocrinology.102:44-59.
 
Hippocampal Gene Expression Is Highly Responsive to Estradiol Replacement in Middle-Aged Female Rats. Sárvári M, Kalló I, Hrabovszky E, Solymosi N, Rodolosse A, Vastagh C, Auer H, Liposits Z. (2015) Endocrinology. 156:2632-45.

 
Early lineage restriction in temporally distinct populations of Mesp1 progenitors during mammalian heart development. Lescroart F, Chabab S, Lin X, Rulands S, Paulissen C, Rodolosse A, Auer H, Achouri Y, Dubois C, Bondue A, Simons BD, Blanpain C. (2014) Nat Cell Biol. 16:829-40.


The effects of frozen tissue storage conditions on the integrity of RNA and protein. Auer H, Mobley J, Ayers L, Bowen J, Chuaqui R, Johnson L, Livolsi V, Lubensky I, McGarvey D, Monovich L, Moskaluk C, Rumpel C, Sexton K, Washington M, Wiles K, Grizzle W, Ramirez NBiotech Histochem. 2014 May 6.

Reciprocal negative cross-talk between liver X receptors (LXRs) and STAT1: effects on IFN-γ-induced inflammatory responses and LXR-dependent gene expression. Pascual-García M, Rué L, León T, Julve J, Carbó JM, Matalonga J, Auer H, Celada A, Escolà-Gil JC, Steffensen KR, Pérez-Navarro E, Valledor AFJ Immunol. 2013;190:6520-32.

Aneuploidy-induced delaminating cells drive tumorigenesis in Drosophila epithelia. Dekanty A, Barrio L, Muzzopappa M, Auer H, Milán M.  Proc Natl Acad Sci U S A. 2012;109:20549-54.

dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes. Lloret-Llinares M, Pérez-Lluch S, Rossell D, Morán T, Ponsa-Cobas J, Auer H, Corominas M, Azorín FNucleic Acids Res. 2012;40:9493-505

Isolation and in vitro expansion of human colonic stem cells. Jung P, Sato T, Merlos-Suárez A, Barriga FM, Iglesias M, Rossell D, Auer H, Gallardo M, Blasco MA, Sancho E, Clevers H, Batlle E.  Nat Med. 2011;17:1225-7

Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development. Vassena R, Boué S, González-Roca E, Aran B, Auer H, Veiga A, Izpisua Belmonte JC.  Development. 2011;138:3699-709

Accurate Expression Profiling of Very Small Cell Populations. Gonzalez-Roca E, Garcia-Albéniz X, Rodriguez-Mulero S, Gomis RR, Kornacker K, Auer HPLoS ONE, 2010; 5:e14418.

Understanding the complete picture of genomic variation. Auer H

Cómo se ‘cocina’ un ser humano. El País

Expression Profiling Using Affymetrix GeneChip Microarrays. Auer H, Newsom DL, Kornacker KMethods Mol Biol. 2009;509:35-46.  

Innate and adaptive immune activation in the brain of MPS IIIB mouse model. DiRosario J, Divers E, Wang C, Etter J, Charrier A, Jukkola P, Auer H, Best V, Newsom DL, McCarty DM, Fu H.  J Neurosci Res. 2009;87:978-90.

Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression. Font-Burgada J, Rossell D, Auer H, Azorín F.  Genes Dev. 2008; 22:3007-23.

Expression divergence and copy number variation in the human genome. Auer H.  Cytogenet Genome Res. 2008;123:278-82.

Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis. Singh S, Robinson M, Ismail I, Saha M, Auer H, Kornacker K, Robinson ML, Bates CM, McHugh KM.  Dev Dyn. 2008;237:170-86.

HOXB4's road map to stem cell expansion. Schiedlmeier B, Santos AC, Ribeiro A, Moncaut N, Lesinski D, Auer H, Kornacker K, Ostertag W, Baum C, Mallo M, Klump HProc Natl Acad Sci U S A. 2007;104:16952-7.

Disruption of ZAS3 in mice alters NF-kappaB and AP-1 DNA binding and T-cell development. Allen CE, Richards J, Muthusamy N, Auer H, Liu Y, Robinson ML, Barnard JA, Wu LCGene Expr. 2007;14:83-100.

Big results from small samples: evaluation of amplification protocols for gene expression profiling. Viale A, Li J, Tiesman J, Hester S, Massimi A, Griffin C, Grills G, Khitrov G, Lilley K, Knudtson K, Ward B, Kornacker K, Chu CY, Auer H, Brooks AI.  J Biomol Tech. 2007;18:150-61.

Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. Auer H, Newsom DL, Nowak NJ, McHugh KM, Singh S, Yu CY, Yang Y, Wenger GD, Gastier-Foster JM, Kornacker KBMC Genomics. 2007;8:111.

Gene expression and functional evidence of epithelial-to-mesenchymal transition in papillary thyroid carcinoma invasion. Vasko V, Espinosa AV, Scouten W, He H, Auer H, Liyanarachchi S, Larin A, Savchenko V, Francis GL, de la Chapelle A, Saji M, Ringel MD.  Proc Natl Acad Sci U S A. 2007;104:2803-8. 

Quantification of DNA methylation in electrofluidics chips (Bio-COBRA). Brena RM, Auer H, Kornacker K, Plass C.  Nat Protoc. 2006;1:52-8.

ADOA3R as a therapeutic target in experimental colitis: proof by validated high-density oligonucleotide microarray analysis. Guzman J, Yu JG, Suntres Z, Bozarov A, Cooke H, Javed N, Auer H, Palatini J, Hassanain HH, Cardounel AJ, Javed A, Grants I, Wunderlich JE, Christofi FLInflamm Bowel Dis. 2006;12:766-89.

20q11.1 amplification in giant-cell tumor of bone: Array CGH, FISH, and association with outcome. Smith LT, Mayerson J, Nowak NJ, Suster D, Mohammed N, Long S, Auer H, Jones S, McKeegan C, Young G, Bos G, Plass C, Morrison C.  Genes Chromosomes Cancer. 2006;45:957-66.

The ABRF MARG microarray survey 2005: taking the pulse of the microarray field. Knudtson KL, Auer H, Brooks AI, Griffin C, Grills G, Hester S, Khitrov G, Lilley KS, Massimi A, Tiesman JP, Viale A.  J Biomol Tech. 2006;17:176-86.

Accurate quantification of DNA methylation using combined bisulfite restriction analysis coupled with the Agilent 2100 Bioanalyzer platform. Brena RM, Auer H, Kornacker K, Hackanson B, Raval A, Byrd JC, Plass C.  Nucleic Acids Res. 2006;34:e17.

MYC amplification and polysomy 8 in chondrosarcoma: array comparative genomic hybridization, fluorescent in situ hybridization, and association with outcome. Morrison C, Radmacher M, Mohammed N, Suster D, Auer H, Jones S, Riggenbach J, Kelbick N, Bos G, Mayerson J.  J Clin Oncol. 2005;23:9369-76. 

Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles Nakagawa H, Liyanarachchi S, Davuluri RV, Auer H, Martin EW Jr, de la Chapelle A, Frankel WLOncogene 2004;23:7366-77.

Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes. Baldus CD, Liyanarachchi S, Mrozek K, Auer H, Tanner SM, Guimond M, Ruppert AS, Mohamed N, Davuluri RV, Caligiuri MA, Bloomfield CD, de la Chapelle A.  Proc.Natl.Acad.Sci.USA 2004;101:3915-20. 

Tissue-wide expression profiling using cDNA Subtraction and Microarrays to identify tumor-specific genes. Amatschek S, Koenig U, Auer H, Steinlein P, Pacher M, Gruenfelder A, Dekan G, Vogl S, Kubista E, Heider KH, Stratowa C, Schreiber M, Sommergruber W.  Cancer Res. 2004;64:844-56.

Bone morphogenic protein 3B silencing in non-small-cell lung cancer. Dai Z, Popkie AP, Zhu W, Timmers CD, Raval A, Tannehill-Gregg S, Morrison CD, Auer H, Kratzke RA, Rosol T, Otterson GA, Plass C.  Oncogene 2004;23:3521-29. 

Chipping away at the chip bias: RNA degradation in microarray analysis. Auer H, Liyanarachchi S, Newsom D, Klisovic MI, Marcucci G, Kornacker K.  Nat.Genet. 2003;35:292-3.

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